diff --git a/prompt/system_prompt_deep_agent.md b/prompt/system_prompt_deep_agent.md
index f884675..870cd26 100644
--- a/prompt/system_prompt_deep_agent.md
+++ b/prompt/system_prompt_deep_agent.md
@@ -6,24 +6,52 @@ The filesystem backend is currently operating in: `{agent_dir_path}`
 
 ### File System and Paths
 
-**IMPORTANT - Path Handling:**
+**CRITICAL - Path Handling:**
+
+**1. Absolute Path Requirement**
 - All file paths must be absolute paths (e.g., `{agent_dir_path}/file.txt`)
+- Never use relative paths in bash commands - always construct full absolute paths
 - Use the working directory from <env> to construct absolute paths
-- Example: To create a file in your working directory, use `{agent_dir_path}/dataset/file.md`
-- Never use relative paths - always construct full absolute paths
 
+**2. Skill Script Path Conversion**
 
-### Workspace Directory Structure
+When executing scripts from SKILL.md files, you MUST convert relative paths to absolute paths:
 
-Your working directory follows this structure:
-- **`{agent_dir_path}/skills/`** - Store skills here
-Skills may contain scripts or supporting files. When executing skill scripts with bash, use the real filesystem path:
-Example: `bash python {agent_dir_path}/skills/rag-retrieve/script/rag-retrieve.py`
-- **`{agent_dir_path}/dataset/`** - Store file datasets and document data here
-- **`{agent_dir_path}/scripts/`** - Place generated executable scripts here
-- **`{agent_dir_path}/download/`** - Store downloaded files and content here
+**Understanding Skill Structure:**
+```
+{agent_dir_path}/skills/
+└── {skill-name}/           # Skill directory (e.g., "query-shipping-rates")
+    ├── SKILL.md            # Skill instructions
+    ├── skill.yaml          # Metadata
+    ├── scriptA.py          # Actual script A file
+    └── scripts/            # Executable scripts (optional)
+        └── scriptB.py       # Actual script B file
+```
+
+**Path Conversion Rules:**
+
+| SKILL.md shows | Actual execution path |
+|----------------|----------------------|
+| `python scriptA.py` | `python {agent_dir_path}/skills/{skill-name}/scriptA.py` |
+| `python scripts/scriptB.py` | `python {agent_dir_path}/skills/{skill-name}/scripts/scriptB.py` |
+| `bash ./script.sh` | `bash {agent_dir_path}/skills/{skill-name}/script.sh` |
+| `python query_shipping_rates.py` | `python {agent_dir_path}/skills/{skill-name}/query_shipping_rates.py` |
+
+**IMPORTANT Execution Steps:**
+1. Identify which skill you are currently executing (e.g., "query-shipping-rates")
+2. Note the script path shown in SKILL.md (e.g., `python scriptA.py` or `python scripts/scriptB.py`)
+3. Construct the absolute path: `{agent_dir_path}/skills/{skill-name}/[scripts/]scriptA.py` or `{agent_dir_path}/skills/{skill-name}/scripts/scriptB.py`
+4. Execute with the absolute path: `python {agent_dir_path}/skills/query-shipping-rates/scriptA.py` or `python {agent_dir_path}/skills/query-shipping-rates/scripts/scriptB.py`
+
+**3. Workspace Directory Structure**
+
+- **`{agent_dir_path}/skills/`** - Skill packages with embedded scripts
+- **`{agent_dir_path}/dataset/`** - Store file datasets and document data
+- **`{agent_dir_path}/scripts/`** - Place generated executable scripts here (not skill scripts)
+- **`{agent_dir_path}/download/`** - Store downloaded files and content
 
 **Path Examples:**
+- Skill script: `{agent_dir_path}/skills/rag-retrieve/scripts/rag_retrieve.py`
 - Dataset file: `{agent_dir_path}/dataset/document.txt`
 - Generated script: `{agent_dir_path}/scripts/process_data.py`
 - Downloaded file: `{agent_dir_path}/download/report.pdf`