Merge branch 'feature/moshui20260511-sub-agents' into dev
This commit is contained in:
commit
9eb1d6b068
@ -1,20 +1,15 @@
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#!/usr/bin/env python3
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"""
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PMDA drug information MCP server.
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PMDA drug information MCP server (mock data version).
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Provides drug search, master info, interactions, restrictions, dosing,
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and full-text chapter retrieval via PostgreSQL + OpenSearch.
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and full-text chapter retrieval with mock data for testing.
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"""
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import asyncio
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import json
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import os
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import sys
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from decimal import Decimal
|
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from typing import Any, Dict, List, Optional
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import psycopg2
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import psycopg2.extras
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from opensearchpy import OpenSearch
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from typing import Any, Dict, Optional
|
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from mcp_common import (
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create_error_response,
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@ -25,189 +20,269 @@ from mcp_common import (
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handle_mcp_streaming,
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)
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# ---------------------------------------------------------------------------
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# Configuration from environment variables
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# ---------------------------------------------------------------------------
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PG_DSN = os.getenv("PMDA_PG_DSN", "")
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OS_HOST = os.getenv("PMDA_OS_HOST", "localhost")
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OS_PORT = int(os.getenv("PMDA_OS_PORT", "9200"))
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OS_INDEX = os.getenv("PMDA_OS_INDEX", "pmda_sections")
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||||
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||||
def _json_default(o):
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"""JSON serializer for objects not serializable by default json code."""
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if isinstance(o, Decimal):
|
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return float(o)
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raise TypeError(f"non-serializable: {type(o).__name__}")
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||||
|
||||
|
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def _dump(obj) -> str:
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||||
return json.dumps(obj, ensure_ascii=False, default=_json_default)
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return json.dumps(obj, ensure_ascii=False)
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||||
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# ---------------------------------------------------------------------------
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# Lazy database connections
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# Mock data
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# ---------------------------------------------------------------------------
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_pg_conn = None
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_os_client = None
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# Drug lookup cache: yj_code -> (brand_name, yj_full)
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_drug_lookup: Optional[Dict[str, tuple]] = None
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MOCK_DRUG_MASTER = {
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"2149039F1082": {
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"yj_code": "2149039F1082",
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"yj_full": "2149039F1082_1_17",
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"brand_name": "ロサルタンK錠50mg「科研」",
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"generic_name": "ロサルタンカリウム",
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"category_code": "214",
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"category_name": "アンジオテンシンII受容体拮抗薬",
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"regulation": "劇薬, 処方箋医薬品",
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"manufacturer": "科研製薬株式会社",
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"revision_date": "2024-06",
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},
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"3399007H1021": {
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"yj_code": "3399007H1021",
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"yj_full": "3399007H1021_1_21",
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"brand_name": "バイアスピリン錠100mg",
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"generic_name": "アスピリン",
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"category_code": "339",
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"category_name": "血液・体液用薬",
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"regulation": "処方箋医薬品",
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"manufacturer": "バイエル薬品株式会社",
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"revision_date": "2024-03",
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},
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"2179004F1026": {
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"yj_code": "2179004F1026",
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"yj_full": "2179004F1026_1_14",
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"brand_name": "ノルバスク錠5mg",
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"generic_name": "アムロジピンベシル酸塩",
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"category_code": "217",
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"category_name": "カルシウム拮抗薬",
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"regulation": "処方箋医薬品",
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"manufacturer": "ファイザー株式会社",
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"revision_date": "2024-01",
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},
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}
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MOCK_CATEGORIES = [
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{"category_code": "214", "category_name": "アンジオテンシンII受容体拮抗薬", "level": "L2", "drug_count": 35},
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{"category_code": "217", "category_name": "カルシウム拮抗薬", "level": "L2", "drug_count": 48},
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{"category_code": "339", "category_name": "血液・体液用薬", "level": "L2", "drug_count": 22},
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{"category_code": "612", "category_name": "消化性潰瘍用剤", "level": "L2", "drug_count": 40},
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]
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def _get_pg():
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global _pg_conn
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if _pg_conn is None or _pg_conn.closed:
|
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if not PG_DSN:
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raise RuntimeError("PMDA_PG_DSN environment variable is not set")
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_pg_conn = psycopg2.connect(PG_DSN)
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_pg_conn.autocommit = True
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return _pg_conn
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MOCK_INTERACTIONS = [
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{
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"drug_a_yj": "2149039F1082",
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"drug_b_yj": "3399007H1021",
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"drug_b_class": "アスピリン(抗血小板剤)",
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"severity": "併用注意",
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"mechanism": "ARBの降圧作用を減弱するおそれがある。また、腎機能低下・高カリウム血症のリスクを増大。",
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"clinical_effect": "降圧効果の減弱、腎機能悪化、高カリウム血症に注意。",
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"source_drug_yj": "2149039F1082",
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"source_section": "10.2 併用注意",
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},
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{
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"drug_a_yj": "3399007H1021",
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"drug_b_yj": "2149039F1082",
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"drug_b_class": "ロサルタンカリウム(ARB)",
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"severity": "併用注意",
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"mechanism": "アスピリンの副作用(消化性潰瘍、腎機能低下)を増強するおそれ。",
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"clinical_effect": "消化性潰瘍、腎機能低下に注意。血清カリウム値の上昇に注意。",
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"source_drug_yj": "3399007H1021",
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"source_section": "10.2 併用注意",
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},
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]
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MOCK_RESTRICTIONS = [
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{
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"drug_yj": "2149039F1082",
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"condition_type": "腎機能障害",
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"condition_text": "腎機能障害患者",
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"condition_params": {"eGFR_max": 30},
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"severity": "慎重投与",
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"source_section": "9.2 腎機能障害患者",
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},
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{
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"drug_yj": "2149039F1082",
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"condition_type": "妊婦",
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"condition_text": "妊娠中の女性",
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"condition_params": {},
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"severity": "禁忌",
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"source_section": "9.5 妊婦",
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||||
},
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{
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"drug_yj": "2149039F1082",
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"condition_type": "高齢者",
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"condition_text": "高齢者(65歳以上)",
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"condition_params": {},
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"severity": "慎重投与",
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"source_section": "9.8 高齢者",
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},
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{
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||||
"drug_yj": "3399007H1021",
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"condition_type": "過敏症",
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"condition_text": "本剤の成分に対し過敏症の既往歴のある患者",
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"condition_params": {},
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"severity": "禁忌",
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"source_section": "2. 禁忌",
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},
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]
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def _get_os() -> OpenSearch:
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global _os_client
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if _os_client is None:
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_os_client = OpenSearch(
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hosts=[{"host": OS_HOST, "port": OS_PORT}],
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use_ssl=False,
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verify_certs=False,
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)
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return _os_client
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MOCK_DOSING = [
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{
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"drug_yj": "2149039F1082",
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"patient_segment": "成人",
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"segment_params": {},
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"indication_code": "高血圧症",
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"dose_amount": "50",
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"dose_unit": "mg",
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"frequency": "1日1回",
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"duration": "",
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"adjustment_text": "効果不十分な場合は100mgまで増量可",
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"source_section": "6. 用法及び用量",
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},
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{
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"drug_yj": "2149039F1082",
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"patient_segment": "腎機能障害患者",
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"segment_params": {"eGFR_max": 30},
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"indication_code": "高血圧症",
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"dose_amount": "25",
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"dose_unit": "mg",
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"frequency": "1日1回",
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"duration": "",
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"adjustment_text": "eGFR 30以下では用量を減ずること。血清カリウム・クレアチニンの推移に注意。",
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"source_section": "9.2 腎機能障害患者",
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},
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]
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MOCK_CHAPTERS = {
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"2149039F1082_1_17": [
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{"section_title": "1. 警告", "line_num": 1, "text_len": 120},
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{"section_title": "2. 禁忌", "line_num": 5, "text_len": 80},
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||||
{"section_title": "4. 効能・効果", "line_num": 12, "text_len": 60},
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{"section_title": "6. 用法及び用量", "line_num": 20, "text_len": 150},
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||||
{"section_title": "9.2 腎機能障害患者", "line_num": 45, "text_len": 200},
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||||
{"section_title": "9.5 妊婦", "line_num": 52, "text_len": 180},
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||||
{"section_title": "9.8 高齢者", "line_num": 60, "text_len": 100},
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||||
{"section_title": "10.2 併用注意", "line_num": 75, "text_len": 350},
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||||
{"section_title": "11.1 重大な副作用", "line_num": 90, "text_len": 400},
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||||
{"section_title": "11.2 その他の副作用", "line_num": 110, "text_len": 300},
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||||
],
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||||
"3399007H1021_1_21": [
|
||||
{"section_title": "1. 警告", "line_num": 1, "text_len": 100},
|
||||
{"section_title": "2. 禁忌", "line_num": 4, "text_len": 90},
|
||||
{"section_title": "4. 効能・効果", "line_num": 10, "text_len": 55},
|
||||
{"section_title": "6. 用法及び用量", "line_num": 18, "text_len": 130},
|
||||
{"section_title": "10.2 併用注意", "line_num": 70, "text_len": 300},
|
||||
{"section_title": "11.1 重大な副作用", "line_num": 85, "text_len": 450},
|
||||
{"section_title": "11.2 その他の副作用", "line_num": 105, "text_len": 280},
|
||||
],
|
||||
}
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||||
|
||||
def _load_drug_lookup() -> Dict[str, tuple]:
|
||||
"""Load yj_code -> (brand_name, yj_full) mapping from drug_master."""
|
||||
global _drug_lookup
|
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if _drug_lookup is not None:
|
||||
return _drug_lookup
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conn = _get_pg()
|
||||
with conn.cursor() as cur:
|
||||
cur.execute("SELECT yj_code, brand_name, yj_full FROM drug_master")
|
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_drug_lookup = {
|
||||
row[0]: (row[1] or "", row[2] or row[0]) for row in cur.fetchall()
|
||||
}
|
||||
return _drug_lookup
|
||||
MOCK_SECTION_TEXT = {
|
||||
("2149039F1082_1_17", "9.2 腎機能障害患者"): (
|
||||
"9.2 腎機能障害患者\n"
|
||||
"腎機能障害患者(eGFR 30 mL/min/1.73m²以下)には、ロサルタンカリウムの"
|
||||
"投与開始用量を25mg/日とし、血清カリウム及び血清クレアチニンの推移に"
|
||||
"十分注意すること。\n"
|
||||
"【理由】腎機能障害患者では、本剤の投与により急速に腎機能が悪化する"
|
||||
"おそれがある。また、高カリウム血症があらわれやすい。"
|
||||
),
|
||||
("2149039F1082_1_17", "9.5 妊婦"): (
|
||||
"9.5 妊婦\n"
|
||||
"妊婦又は妊娠している可能性のある女性には投与しないこと。\n"
|
||||
"【理由】妊娠中期・末期にレニン-アンジオテンシン系に作用する薬剤を"
|
||||
"投与された患者では、胎児の腎機能低下、羊水過少症、頭蓋の発育不全、"
|
||||
"肺低形成等があらわれるおそれがある。"
|
||||
),
|
||||
("2149039F1082_1_17", "10.2 併用注意"): (
|
||||
"10.2 併用注意\n"
|
||||
"・アスピリン(抗血小板剤)\n"
|
||||
" 【リスク】ARBの降圧作用を減弱するおそれがある。\n"
|
||||
" 腎機能低下・高カリウム血症のリスクを増大。\n"
|
||||
" 【措置】降圧効果の減弱、腎機能悪化、高カリウム血症に注意すること。"
|
||||
),
|
||||
("2149039F1082_1_17", "11.1 重大な副作用"): (
|
||||
"11.1 重大な副作用\n"
|
||||
"・血管浮腫(頻度不明):顔面、口唇、咽頭、舌等の腫脹があらわれた場合には"
|
||||
"直ちに投与を中止し、適切な処置を行うこと。\n"
|
||||
"・高カリウム血症(0.1%未満):血清カリウム値の上昇があらわれることがある。\n"
|
||||
"・腎機能悪化(0.1%未満):BUN、クレアチニンの上昇があらわれることがある。"
|
||||
),
|
||||
("3399007H1021_1_21", "10.2 併用注意"): (
|
||||
"10.2 併用注意\n"
|
||||
"・ロサルタンカリウム(ARB)\n"
|
||||
" 【リスク】アスピリンの副作用(消化性潰瘍、腎機能低下)を増強するおそれ。\n"
|
||||
" 【措置】消化性潰瘍、腎機能低下に注意。血清カリウム値の上昇に注意すること。"
|
||||
),
|
||||
("3399007H1021_1_21", "11.1 重大な副作用"): (
|
||||
"11.1 重大な副作用\n"
|
||||
"・ショック、アナフィラキシー(頻度不明):呼吸困難、血圧低下等があらわれた\n"
|
||||
" 場合には直ちに投与を中止し、適切な処置を行うこと。\n"
|
||||
"・消化性潰瘍(0.1%未満):出血、穿孔があらわれることがある。\n"
|
||||
"・腎機能障害(0.1%未満):急性腎不全があらわれることがある。"
|
||||
),
|
||||
}
|
||||
|
||||
|
||||
def _citation(drug_yj: str, section: Optional[str]) -> str:
|
||||
"""Format citation string: [出典: <brand> (yj_full=<id>) / <section>]"""
|
||||
lk = _load_drug_lookup()
|
||||
brand, yj_full = lk.get(drug_yj, ("", drug_yj))
|
||||
drug = MOCK_DRUG_MASTER.get(drug_yj, {})
|
||||
brand = drug.get("brand_name", "")
|
||||
yj_full = drug.get("yj_full", drug_yj)
|
||||
chap = section or "(章不明)"
|
||||
return f"[出典: {brand} (yj_full={yj_full}) / {chap}]"
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Tool implementations
|
||||
# Tool implementations (mock)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def _tool_search_drugs(query: str, kind: str = "auto", limit: int = 10) -> str:
|
||||
"""Search drugs by brand name, generic name, or YJ code."""
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
if kind == "yj":
|
||||
cur.execute(
|
||||
"SELECT yj_full, yj_code, brand_name, generic_name, "
|
||||
"category_code, category_name FROM drug_master "
|
||||
"WHERE yj_code ILIKE %s OR yj_full ILIKE %s LIMIT %s",
|
||||
(f"%{query}%", f"%{query}%", limit),
|
||||
)
|
||||
elif kind == "brand":
|
||||
cur.execute(
|
||||
"SELECT yj_full, yj_code, brand_name, generic_name, "
|
||||
"category_code, category_name, "
|
||||
"similarity(brand_name, %s) AS score "
|
||||
"FROM drug_master "
|
||||
"WHERE brand_name ILIKE %s ORDER BY score DESC LIMIT %s",
|
||||
(query, f"%{query}%", limit),
|
||||
)
|
||||
elif kind == "generic":
|
||||
cur.execute(
|
||||
"SELECT yj_full, yj_code, brand_name, generic_name, "
|
||||
"category_code, category_name, "
|
||||
"similarity(generic_name, %s) AS score "
|
||||
"FROM drug_master "
|
||||
"WHERE generic_name ILIKE %s ORDER BY score DESC LIMIT %s",
|
||||
(query, f"%{query}%", limit),
|
||||
)
|
||||
else: # auto
|
||||
cur.execute(
|
||||
"SELECT yj_full, yj_code, brand_name, generic_name, "
|
||||
"category_code, category_name, "
|
||||
"GREATEST("
|
||||
" similarity(brand_name, %s),"
|
||||
" similarity(generic_name, %s)"
|
||||
") AS score "
|
||||
"FROM drug_master "
|
||||
"WHERE brand_name ILIKE %s OR generic_name ILIKE %s "
|
||||
" OR yj_code ILIKE %s OR yj_full ILIKE %s "
|
||||
"ORDER BY score DESC LIMIT %s",
|
||||
(query, query, f"%{query}%", f"%{query}%", f"%{query}%", f"%{query}%", limit),
|
||||
)
|
||||
rows = cur.fetchall()
|
||||
return _dump([
|
||||
{
|
||||
"yj_full": r.get("yj_full", ""),
|
||||
"yj_code": r.get("yj_code", ""),
|
||||
"brand": r.get("brand_name", ""),
|
||||
"generic": r.get("generic_name", ""),
|
||||
"category": f"{r.get('category_code', '')} {r.get('category_name', '')}".strip(),
|
||||
"score": float(r.get("score", 0)) if r.get("score") else 0.0,
|
||||
}
|
||||
for r in rows
|
||||
])
|
||||
results = []
|
||||
for code, d in MOCK_DRUG_MASTER.items():
|
||||
q = query.lower()
|
||||
if (kind == "brand" and q in d["brand_name"].lower()) or \
|
||||
(kind == "generic" and q in d["generic_name"].lower()) or \
|
||||
(kind == "yj" and (q in d["yj_code"].lower() or q in d["yj_full"].lower())) or \
|
||||
(kind == "auto" and (q in d["brand_name"].lower() or q in d["generic_name"].lower()
|
||||
or q in d["yj_code"].lower() or q in d["yj_full"].lower())):
|
||||
results.append({
|
||||
"yj_full": d["yj_full"],
|
||||
"yj_code": d["yj_code"],
|
||||
"brand": d["brand_name"],
|
||||
"generic": d["generic_name"],
|
||||
"category": f"{d['category_code']} {d['category_name']}",
|
||||
"score": 1.0,
|
||||
})
|
||||
return _dump(results[:limit])
|
||||
|
||||
|
||||
def _tool_list_categories() -> str:
|
||||
"""List all L1/L2 drug categories with drug counts."""
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
cur.execute(
|
||||
"SELECT c.category_code, c.category_name, c.level, "
|
||||
"COUNT(m.yj_code) AS drug_count "
|
||||
"FROM drug_category c "
|
||||
"LEFT JOIN drug_master m ON m.category_code = c.category_code "
|
||||
"WHERE c.level IN ('L1', 'L2') "
|
||||
"GROUP BY c.category_code, c.category_name, c.level "
|
||||
"ORDER BY c.category_code"
|
||||
)
|
||||
rows = cur.fetchall()
|
||||
return _dump([dict(r) for r in rows])
|
||||
return _dump(MOCK_CATEGORIES)
|
||||
|
||||
|
||||
def _tool_list_drugs_in_category(l2_code: str, limit_generics: int = 50) -> str:
|
||||
"""List drugs under a specific L2 category code."""
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
cur.execute(
|
||||
"SELECT generic_name, json_agg(json_build_object("
|
||||
" 'yj_code', yj_code, 'brand_name', brand_name, 'yj_full', yj_full"
|
||||
")) AS brands "
|
||||
"FROM drug_master "
|
||||
"WHERE category_code ILIKE %s "
|
||||
"GROUP BY generic_name "
|
||||
"ORDER BY generic_name LIMIT %s",
|
||||
(f"{l2_code}%", limit_generics),
|
||||
)
|
||||
rows = cur.fetchall()
|
||||
return _dump([{"generic_name": r["generic_name"], "brands": r["brands"]} for r in rows])
|
||||
results = []
|
||||
seen_generics = set()
|
||||
for code, d in MOCK_DRUG_MASTER.items():
|
||||
if d["category_code"].startswith(l2_code) and d["generic_name"] not in seen_generics:
|
||||
seen_generics.add(d["generic_name"])
|
||||
results.append({
|
||||
"generic_name": d["generic_name"],
|
||||
"brands": [{"yj_code": d["yj_code"], "brand_name": d["brand_name"], "yj_full": d["yj_full"]}],
|
||||
})
|
||||
return _dump(results[:limit_generics])
|
||||
|
||||
|
||||
def _tool_get_drug_master(yj_code: str) -> str:
|
||||
"""Get basic info for a drug by yj_code."""
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
cur.execute(
|
||||
"SELECT * FROM drug_master WHERE yj_code = %s LIMIT 1",
|
||||
(yj_code,),
|
||||
)
|
||||
row = cur.fetchone()
|
||||
if not row:
|
||||
d = MOCK_DRUG_MASTER.get(yj_code)
|
||||
if not d:
|
||||
return _dump({"error": f"yj_code {yj_code} not found"})
|
||||
d = dict(row)
|
||||
d["_citation"] = f"[出典: {row.get('brand_name', '')} (yj_full={row.get('yj_full', '')}) / 添付文書冒頭]"
|
||||
return _dump(d)
|
||||
result = dict(d)
|
||||
result["_citation"] = f"[出典: {d['brand_name']} (yj_full={d['yj_full']}) / 添付文書冒頭]"
|
||||
return _dump(result)
|
||||
|
||||
|
||||
def _tool_get_drug_interactions(
|
||||
@ -217,45 +292,22 @@ def _tool_get_drug_interactions(
|
||||
keyword: Optional[str] = None,
|
||||
limit: int = 30,
|
||||
) -> str:
|
||||
"""Search drug_interaction table."""
|
||||
conditions = []
|
||||
params = []
|
||||
if drug_a_yj:
|
||||
conditions.append("drug_a_yj = %s")
|
||||
params.append(drug_a_yj)
|
||||
if drug_b_yj:
|
||||
conditions.append("(drug_b_yj = %s OR drug_a_yj = %s)")
|
||||
params.extend([drug_b_yj, drug_b_yj])
|
||||
if severity:
|
||||
conditions.append("severity = %s")
|
||||
params.append(severity)
|
||||
if keyword:
|
||||
conditions.append("(drug_b_class ILIKE %s OR mechanism ILIKE %s OR clinical_effect ILIKE %s)")
|
||||
k = f"%{keyword}%"
|
||||
params.extend([k, k, k])
|
||||
|
||||
where = " AND ".join(conditions) if conditions else "1=1"
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
cur.execute(
|
||||
f"SELECT * FROM drug_interaction WHERE {where} LIMIT %s",
|
||||
(*params, limit),
|
||||
)
|
||||
rows = cur.fetchall()
|
||||
return _dump([
|
||||
{
|
||||
"drug_a_yj": r.get("drug_a_yj"),
|
||||
"drug_b_yj": r.get("drug_b_yj"),
|
||||
"drug_b_class": r.get("drug_b_class"),
|
||||
"severity": r.get("severity"),
|
||||
"mechanism": r.get("mechanism"),
|
||||
"clinical_effect": r.get("clinical_effect"),
|
||||
"source_drug_yj": r.get("source_drug_yj"),
|
||||
"source_section": r.get("source_section"),
|
||||
"_citation": _citation(r.get("source_drug_yj", ""), r.get("source_section")),
|
||||
}
|
||||
for r in rows
|
||||
])
|
||||
results = []
|
||||
for r in MOCK_INTERACTIONS:
|
||||
if drug_a_yj and r["drug_a_yj"] != drug_a_yj:
|
||||
continue
|
||||
if drug_b_yj and r["drug_b_yj"] != drug_b_yj:
|
||||
continue
|
||||
if severity and r["severity"] != severity:
|
||||
continue
|
||||
if keyword and keyword.lower() not in (
|
||||
(r.get("drug_b_class") or "").lower()
|
||||
+ (r.get("mechanism") or "").lower()
|
||||
+ (r.get("clinical_effect") or "").lower()
|
||||
):
|
||||
continue
|
||||
results.append({**r, "_citation": _citation(r["source_drug_yj"], r["source_section"])})
|
||||
return _dump(results[:limit])
|
||||
|
||||
|
||||
def _tool_get_drug_restrictions(
|
||||
@ -265,42 +317,18 @@ def _tool_get_drug_restrictions(
|
||||
keyword: Optional[str] = None,
|
||||
limit: int = 30,
|
||||
) -> str:
|
||||
"""Search drug_restriction table."""
|
||||
conditions = []
|
||||
params = []
|
||||
if drug_yj:
|
||||
conditions.append("drug_yj = %s")
|
||||
params.append(drug_yj)
|
||||
if condition_type:
|
||||
conditions.append("condition_type = %s")
|
||||
params.append(condition_type)
|
||||
if severity:
|
||||
conditions.append("severity = %s")
|
||||
params.append(severity)
|
||||
if keyword:
|
||||
conditions.append("condition_text ILIKE %s")
|
||||
params.append(f"%{keyword}%")
|
||||
|
||||
where = " AND ".join(conditions) if conditions else "1=1"
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
cur.execute(
|
||||
f"SELECT * FROM drug_restriction WHERE {where} LIMIT %s",
|
||||
(*params, limit),
|
||||
)
|
||||
rows = cur.fetchall()
|
||||
return _dump([
|
||||
{
|
||||
"drug_yj": r.get("drug_yj"),
|
||||
"condition_type": r.get("condition_type"),
|
||||
"condition_text": r.get("condition_text"),
|
||||
"condition_params": r.get("condition_params"),
|
||||
"severity": r.get("severity"),
|
||||
"source_section": r.get("source_section"),
|
||||
"_citation": _citation(r.get("drug_yj", ""), r.get("source_section")),
|
||||
}
|
||||
for r in rows
|
||||
])
|
||||
results = []
|
||||
for r in MOCK_RESTRICTIONS:
|
||||
if drug_yj and r["drug_yj"] != drug_yj:
|
||||
continue
|
||||
if condition_type and r["condition_type"] != condition_type:
|
||||
continue
|
||||
if severity and r["severity"] != severity:
|
||||
continue
|
||||
if keyword and keyword.lower() not in (r.get("condition_text") or "").lower():
|
||||
continue
|
||||
results.append({**r, "_citation": _citation(r["drug_yj"], r["source_section"])})
|
||||
return _dump(results[:limit])
|
||||
|
||||
|
||||
def _tool_get_drug_dosing(
|
||||
@ -308,36 +336,14 @@ def _tool_get_drug_dosing(
|
||||
patient_segment: Optional[str] = None,
|
||||
limit: int = 20,
|
||||
) -> str:
|
||||
"""Search drug_dosing table."""
|
||||
conditions = ["drug_yj = %s"]
|
||||
params = [drug_yj]
|
||||
if patient_segment:
|
||||
conditions.append("patient_segment = %s")
|
||||
params.append(patient_segment)
|
||||
|
||||
where = " AND ".join(conditions)
|
||||
conn = _get_pg()
|
||||
with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
|
||||
cur.execute(
|
||||
f"SELECT * FROM drug_dosing WHERE {where} LIMIT %s",
|
||||
(*params, limit),
|
||||
)
|
||||
rows = cur.fetchall()
|
||||
return _dump([
|
||||
{
|
||||
"patient_segment": r.get("patient_segment"),
|
||||
"segment_params": r.get("segment_params"),
|
||||
"indication_code": r.get("indication_code"),
|
||||
"dose_amount": r.get("dose_amount"),
|
||||
"dose_unit": r.get("dose_unit"),
|
||||
"frequency": r.get("frequency"),
|
||||
"duration": r.get("duration"),
|
||||
"adjustment_text": r.get("adjustment_text"),
|
||||
"source_section": r.get("source_section"),
|
||||
"_citation": _citation(drug_yj, r.get("source_section")),
|
||||
}
|
||||
for r in rows
|
||||
])
|
||||
results = []
|
||||
for r in MOCK_DOSING:
|
||||
if r["drug_yj"] != drug_yj:
|
||||
continue
|
||||
if patient_segment and r["patient_segment"] != patient_segment:
|
||||
continue
|
||||
results.append({**r, "_citation": _citation(drug_yj, r["source_section"])})
|
||||
return _dump(results[:limit])
|
||||
|
||||
|
||||
def _tool_search_section_text(
|
||||
@ -345,141 +351,73 @@ def _tool_search_section_text(
|
||||
section_filter: str = "",
|
||||
limit: int = 30,
|
||||
) -> str:
|
||||
"""Full-text search in OpenSearch pmda_sections index."""
|
||||
if not keyword.strip():
|
||||
return _dump({"keyword": keyword, "total_drugs": 0, "shown": 0, "hits": []})
|
||||
|
||||
size = min(max(1, limit), 100)
|
||||
body: Dict[str, Any] = {
|
||||
"size": size,
|
||||
"_source": ["yj_full", "brand_names", "generic_name", "l2_code", "l2_name", "section_title", "line_num"],
|
||||
"query": {"bool": {"must": [{"match": {"text": keyword}}]}},
|
||||
"collapse": {
|
||||
"field": "yj_full",
|
||||
"inner_hits": {
|
||||
"name": "matches",
|
||||
"size": 2,
|
||||
"_source": ["section_title", "line_num"],
|
||||
"highlight": {"fields": {"text": {"fragment_size": 160, "number_of_fragments": 1}}},
|
||||
},
|
||||
},
|
||||
"aggs": {"total_drugs": {"cardinality": {"field": "yj_full"}}},
|
||||
}
|
||||
if section_filter:
|
||||
body["query"]["bool"]["filter"] = [
|
||||
{"wildcard": {"section_title.raw": f"*{section_filter}*"}}
|
||||
]
|
||||
|
||||
client = _get_os()
|
||||
resp = client.search(index=OS_INDEX, body=body)
|
||||
total = int(resp["aggregations"]["total_drugs"]["value"])
|
||||
|
||||
# Simple mock: search through section text
|
||||
hits_out = []
|
||||
for h in resp["hits"]["hits"]:
|
||||
src = h.get("_source") or {}
|
||||
inner = h.get("inner_hits", {}).get("matches", {}).get("hits", {}).get("hits", [])
|
||||
matches = []
|
||||
seen = set()
|
||||
for ih in inner:
|
||||
ih_src = ih.get("_source") or {}
|
||||
title = ih_src.get("section_title") or ""
|
||||
if title in seen:
|
||||
for (yj_full, section_title), text in MOCK_SECTION_TEXT.items():
|
||||
if section_filter and section_filter not in section_title:
|
||||
continue
|
||||
if keyword.lower() in text.lower():
|
||||
drug = None
|
||||
for d in MOCK_DRUG_MASTER.values():
|
||||
if d["yj_full"] == yj_full:
|
||||
drug = d
|
||||
break
|
||||
if not drug:
|
||||
continue
|
||||
seen.add(title)
|
||||
hl = ih.get("highlight", {}).get("text", [""])
|
||||
matches.append({"section_title": title, "snippet": hl[0] if hl else ""})
|
||||
brand = (src.get("brand_names") or [""])[0]
|
||||
yj_full = src.get("yj_full") or ""
|
||||
hits_out.append({
|
||||
"yj_full": yj_full,
|
||||
"brand": brand,
|
||||
"generic": src.get("generic_name") or "",
|
||||
"l2": f"{src.get('l2_code') or ''} {src.get('l2_name') or ''}".strip(),
|
||||
"matches": matches,
|
||||
"_citation_template": f"[出典: {brand} (yj_full={yj_full}) / <該当章>]",
|
||||
})
|
||||
brand = drug["brand_name"]
|
||||
# Deduplicate by yj_full
|
||||
existing = [h for h in hits_out if h["yj_full"] == yj_full]
|
||||
if existing:
|
||||
existing[0]["matches"].append({
|
||||
"section_title": section_title,
|
||||
"snippet": text[:160],
|
||||
})
|
||||
continue
|
||||
hits_out.append({
|
||||
"yj_full": yj_full,
|
||||
"brand": brand,
|
||||
"generic": drug["generic_name"],
|
||||
"l2": f"{drug['category_code']} {drug['category_name']}",
|
||||
"matches": [{"section_title": section_title, "snippet": text[:160]}],
|
||||
"_citation_template": f"[出典: {brand} (yj_full={yj_full}) / <該当章>]",
|
||||
})
|
||||
|
||||
out = {
|
||||
return _dump({
|
||||
"keyword": keyword,
|
||||
"section_filter": section_filter or None,
|
||||
"total_drugs": total,
|
||||
"total_drugs": len({h["yj_full"] for h in hits_out}),
|
||||
"shown": len(hits_out),
|
||||
"hits": hits_out,
|
||||
}
|
||||
if total > len(hits_out):
|
||||
out["_more_count"] = total - len(hits_out)
|
||||
return _dump(out)
|
||||
"hits": hits_out[:limit],
|
||||
})
|
||||
|
||||
|
||||
def _tool_list_drug_chapters(yj_full: str) -> str:
|
||||
"""List all chapter titles for a drug's package insert."""
|
||||
client = _get_os()
|
||||
body = {
|
||||
"size": 200,
|
||||
"_source": ["yj_full", "brand_names", "generic_name", "section_title", "line_num"],
|
||||
"query": {"term": {"yj_full": yj_full}},
|
||||
"sort": [{"line_num": {"order": "asc"}}],
|
||||
}
|
||||
resp = client.search(index=OS_INDEX, body=body)
|
||||
hits = resp["hits"]["hits"]
|
||||
|
||||
if not hits:
|
||||
sections = MOCK_CHAPTERS.get(yj_full)
|
||||
if not sections:
|
||||
return _dump({"error": f"yj_full {yj_full} の章節が見つかりません。"})
|
||||
|
||||
sections = []
|
||||
for h in hits:
|
||||
src = h.get("_source") or {}
|
||||
# Calculate text length from _score or use stored field
|
||||
sections.append({
|
||||
"section_title": src.get("section_title", ""),
|
||||
"line_num": src.get("line_num", 0),
|
||||
"text_len": 0, # not available from list query
|
||||
})
|
||||
drug = None
|
||||
for d in MOCK_DRUG_MASTER.values():
|
||||
if d["yj_full"] == yj_full:
|
||||
drug = d
|
||||
break
|
||||
|
||||
head = hits[0].get("_source") or {}
|
||||
return _dump({
|
||||
"yj_full": yj_full,
|
||||
"brand": (head.get("brand_names") or [""])[0],
|
||||
"generic": head.get("generic_name", ""),
|
||||
"brand": drug["brand_name"] if drug else "",
|
||||
"generic": drug["generic_name"] if drug else "",
|
||||
"n_sections": len(sections),
|
||||
"sections": sections,
|
||||
})
|
||||
|
||||
|
||||
def _tool_read_drug_chapter(yj_full: str, section_title: str) -> str:
|
||||
"""Read verbatim text of a specific chapter."""
|
||||
client = _get_os()
|
||||
body = {
|
||||
"size": 1,
|
||||
"_source": ["text", "section_title"],
|
||||
"query": {
|
||||
"bool": {
|
||||
"must": [
|
||||
{"term": {"yj_full": yj_full}},
|
||||
{"term": {"section_title.keyword": section_title}},
|
||||
]
|
||||
}
|
||||
},
|
||||
}
|
||||
resp = client.search(index=OS_INDEX, body=body)
|
||||
hits = resp["hits"]["hits"]
|
||||
|
||||
if hits:
|
||||
text = hits[0].get("_source", {}).get("text", "")
|
||||
if text:
|
||||
return text[:8000]
|
||||
|
||||
# Fallback: try match instead of term for section_title
|
||||
body["query"]["bool"]["must"][1] = {"match_phrase": {"section_title": section_title}}
|
||||
resp = client.search(index=OS_INDEX, body=body)
|
||||
hits = resp["hits"]["hits"]
|
||||
|
||||
if hits:
|
||||
text = hits[0].get("_source", {}).get("text", "")
|
||||
if text:
|
||||
return text[:8000]
|
||||
|
||||
# Not found — suggest listing chapters
|
||||
text = MOCK_SECTION_TEXT.get((yj_full, section_title))
|
||||
if text:
|
||||
return text[:8000]
|
||||
return _dump({
|
||||
"error": f"section_title {section_title!r} は {yj_full} に存在しません。",
|
||||
"hint": "list_drug_chapters で取得した sections[].section_title をそのまま渡してください。",
|
||||
@ -490,7 +428,6 @@ def _tool_read_drug_chapter(yj_full: str, section_title: str) -> str:
|
||||
# MCP request handler
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
# Map tool names to their implementation functions
|
||||
_TOOL_DISPATCH = {
|
||||
"search_drugs": lambda args: _tool_search_drugs(
|
||||
query=args.get("query", ""),
|
||||
|
||||
Loading…
Reference in New Issue
Block a user